Additional file 4.

Recall rates, considering LOH status, by method, contamination, and alteration copy number and length. Recall rates (y-axis) of calls made with correct copy number and LOH status. By: (i) normal cell contamination (x-axis), (ii) contamination and copy number (x-axis), and (iii) contamination and alteration length (x-axis) over each of the 5 synthetic sample sets. Colour code: GAP (orange), updated GAP (golden), ASCAT (purple), GPHMM (black), OncoSNP (blue), GenoCNA (green), MixHMM (grey).

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Mosén-Ansorena et al. BMC Bioinformatics 2012 13:192   doi:10.1186/1471-2105-13-192