Figure 3.

Multiple viewing mode. In this viewing mode, conserved regions connecting all visible genomes are shown. The regions associated with one or more particular genome pairs can be hidden using the buttons above the synteny display. Genomes can also be rearranged or removed. Clicking the “Optimize order” button at the top rearranges the genomes to reduce the number and size of conserved regions overlapping other genomes. In this viewing mode, annotations are not shown and each genome is displayed no more than once. As in the pairwise viewing mode, genome control panels allow the viewing ranges to be adjusted. All visible synteny regions can be filtered according to numerical criteria specified in the synteny input file. See main text for more details.

Revanna et al. BMC Bioinformatics 2012 13:190   doi:10.1186/1471-2105-13-190
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