Table 2

Statistics on the assembly ofY. PestisKIM with optical maps of different error rates
Sequence Correct Edges Correct Landmarks Final Contigs N50 Size
Low Error 99.13% 192/199 64 12 1,190,834
Med Error 97.57% 188/199 38 20 905,369
High Error 90.52% 169/199 25 81 776,452
Map from [13] 86.74% 149/199 26 80 405,321

A summary of the results of our algorithm on assembling Y. Pestis KIM, when given a de Bruijn graph with k-mer size 500, and a simulated optimal or experimental optical map from [13].

Lin et al.

Lin et al. BMC Bioinformatics 2012 13:189   doi:10.1186/1471-2105-13-189

Open Data