Additional file 2.

Figure showing the impact of starting N50 size of the de Bruijn graph on sequence correctness. A plot showing the sequence correctness of 369 bacterial genome assemblies by AGORA versus the starting N50 size of their de Bruijn graphs, under three different optical map error rates. Genomes with starting N50 size greater than 50 kbp are generally assembled with higher than 98% correctness over all three error rates, while the results are mixed for genomes with lower starting N50 size.

Format: PNG Size: 40KB Download file

Lin et al. BMC Bioinformatics 2012 13:189   doi:10.1186/1471-2105-13-189