Table 3

Annotation comparison methods
Perfect matches 22,333 94.7%
CDS structure matches 0 0.0%
Exon structure matches 0 0.0%
UTR structure matches 83 0.4%
Non-matches 1,174 5.0%
Total comparisons 23,590 100.0%

Results from a ParsEval comparison of gene annotations for Mus musculus from two recent releases of the Ensembl database (releases 64 and 65). Release 64 contains 22,507 gene annotations, while release 65 contains 14,486 gene annotations. ParsEval identified 20,362 gene loci using these two data sets, 6,725 of which contained only annotations from release 64. For the 13,637 gene loci for which both release 64 and 65 have annotations, 23,590 comparisons were performed. Each of these comparisons was classified according to how well the annotations from the two releases agreed. This table shows a breakdown of these results.

Standage and Brendel

Standage and Brendel BMC Bioinformatics 2012 13:187   doi:10.1186/1471-2105-13-187

Open Data