Table 1

Estimated error rates (as a percent) in PhiX samples
Sample ID Shadow regression mm mm / new genome
100217 2.613 (2.264, 2.962) 7.466 4.429
100514 1.416 (1.331, 1.500) 5.706 2.244

The intervals in parentheses for shadow regression estimates are the 95% confidence intervals of the estimates. The column “mm” gives the mismatch counting estimates using the standard PhiX reference genome. The column “mm / new genome” gives the mismatch counting estimates using the PhiX genome corrected for mutations shown in Figure 7.

Victoria Wang et al.

Victoria Wang et al. BMC Bioinformatics 2012 13:185   doi:10.1186/1471-2105-13-185

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