Open Access Highly Accessed Methodology article

The Triform algorithm: improved sensitivity and specificity in ChIP-Seq peak finding

Karl Kornacker1, Morten Beck Rye2, Tony Håndstad2 and Finn Drabløs2*

Author Affiliations

1 Division of Sensory Biophysics, Ohio State University, Columbus, OH, USA

2 Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology (NTNU), P.O. Box 8905, NO-7491, Trondheim, Norway

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BMC Bioinformatics 2012, 13:176  doi:10.1186/1471-2105-13-176

Published: 24 July 2012

Additional files

Additional file 1:

Supplementary Information. Implementation of the Triform algorithm.

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Additional file 2:

Full results of motif enrichment benchmark test.Figure S1 - Results for NRSF. Figure S2 - Results for SRF. Figure S3 - Results for MAX.

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