|Performance comparison of gene/protein extraction tools with our metabolic reaction extraction method|
Range of scores on
different corpora (%)
|(trained on BioInfer)||Protein-protein||29-77||40-56|
|in this paper||Substrate-product||40-88||20-82|
|in this paper||Substrate-enzyme||62-80||37-64|
|in this paper||Product-enzyme||58-67||36-70|
The range of scores for the gene/protein extraction tools are for five corpora as evaluated in . The scores for our metabolic reaction extraction method summarize those in Table 4, i.e. they are broken down into the same three binary interactions and the range is for the three evaluation corpora and the Reactome dataset.
Czarnecki et al.
Czarnecki et al. BMC Bioinformatics 2012 13:172 doi:10.1186/1471-2105-13-172