Additional file 1.
ReactionExtractor. An example Java program, provided as a runnable .jar file, implementing the algorithm described in the paper. The program takes a plain text file as input and outputs all predicted reactions from the input text. Running instructions are included in the archive. The open source tools described in the paper (BANNER, OSCAR3 and OpenNLP) are all included in the archive.
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Czarnecki et al. BMC Bioinformatics 2012 13:172 doi:10.1186/1471-2105-13-172