Table 1

The positive dataset, composed of 80 non-redundant protein-hexose binding sites
Hexose PDB ID Ligand PDB ID Ligand
Glucose 1BDG GLC-501 1ISY GLC-1471
1EX1 GLC-617 1J0Y GLC-1601
1GJW GLC-701 1JG9 GLC-2000
1GWW GLC-1371 1K1W GLC-653
1H5U GLC-998 1KME GLC-501
1HIZ GLC-1381 1MMU GLC-1
1HIZ GLC-1382 1NF5 GLC-125
1HKC GLC-915 1NSZ GLC-1400
1HSJ GLC-671 1PWB GLC-405
1HSJ GLC-672 1Q33 GLC-400
1I8A GLC-189 1RYD GLC-601
1ISY GLC-1461 1S5M AGC-1001
1SZ2 BGC-1001 1SZ2 BGC-2001
1U2S GLC-1 1UA4 GLC-1457
1V2B AGC-1203 1WOQ GLC-290
1Z8D GLC-901 2BQP GLC-337
2BVW GLC-602 2BVW GLC-603
2F2E AGC-401
Galactose 1AXZ GLA-401 1MUQ GAL-301
1DIW GAL-1400 1NS0 GAL-1400
1DJR GAL-1104 1NS2 GAL-1400
1DZQ GAL-502 1NS8 GAL-1400
1EUU GAL-2 1NSM GAL-1400
1ISZ GAL-461 1NSU GAL-1400
1ISZ GAL-471 1NSX GAL-1400
1JZ7 GAL-2001 1OKO GLB-901
1KWK GAL-701 1OQL GAL-265
1L7K GAL-500 1OQL GAL-267
1LTI GAL-104 1PIE GAL-1
1R47 GAL-1101 1S5D GAL-704
1S5E GAL-751 1S5F GAL-104
1SO0 GAL-500 1TLG GAL-1
1UAS GAL-1501 1UGW GAL-200
1XC6 GAL-9011 1ZHJ GAL-1
2GAL GAL-998
Mannose 1BQP MAN-402 1KZB MAN-1501
1KLF MAN-1500 1KZC MAN-1001
1KX1 MAN-20 1KZE MAN-1001
1KZA MAN-1001 1OP3 MAN-503
1OUR MAN-301 1QMO MAN-302
1U4J MAN-1008 1U4J MAN-1009

The table lists the protein’s PDB ID and the hexose ligand considered.

A Santos et al.

A Santos et al. BMC Bioinformatics 2012 13:162   doi:10.1186/1471-2105-13-162

Open Data