Table 4

de novo assembly results
ParticleCall ParticleCall
Coverage Bustard Rolexa naiveBayesCall BayesCall via MCEM via PFEM
N50 Max N50 Max N50 Max N50 Max N50 Max N50 Max
5X 271 607 259 565 278 604 292 629 299 637 289 632
10X 1169 1750 971 1557 1180 1731 1269 1831 1316 1900 1341 1865
15X 3624 3823 2885 3170 3726 3908 3466 3741 3742 3935 3697 3918
20X 4694 4744 4529 4614 4756 4816 4827 4875 5102 5116 4795 5039

The maximum contig length and N50 length of de novo assembly using Velvet. The average values over 200 experiments are shown in the table.

Shen and Vikalo

Shen and Vikalo BMC Bioinformatics 2012 13:160   doi:10.1186/1471-2105-13-160

Open Data