Table 1

Comparison of ParticleCall with differentNp
Method Np error rate base-calling time (min)
ParticleCall (via MCEM) 400 0.0126 46
800 0.0124 88
1200 0.0124 130
ParticleCall (via PFEM) 400 0.0128 46
800 0.0125 91
1200 0.0125 133
Rao-Blackwellized ParticleCall (via MCEM) 100 0.0128 103
200 0.0125 190
300 0.0124 287
400 0.0124 386

ParticleCall is run using parameters obtained via the MCEM parameter estimation scheme as well as via the PFEM parameter estimation algorithm proposed in this paper. Rao-Blackwellized ParticleCall is run using parameters via the MCEM parameter estimation scheme.

Shen and Vikalo

Shen and Vikalo BMC Bioinformatics 2012 13:160   doi:10.1186/1471-2105-13-160

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