Table 1

Taxon and Intra measure, output 1
Average absolute/relative Taxon/Intra distances per method for non-Metazoa
133525 orthologous groups
Method Taxon RF Taxon 0-1 Intra
Mafft_InducDist_BioME 1.4254 16.75% 0.4631 1.6124 29.23%
Mafft_InducDist_FastME 1.4258 16.76% 0.4632 1.6137 29.25%
ClustalO_InducDist_BioME 1.4262 16.77% 0.4634 1.6137 29.25%
ClustalO_InducDist_FastME 1.4266 16.77% 0.4634 1.6147 29.26%
ClustalW_InducDist_BioME 1.4277 16.78% 0.4637 1.6147 29.31%
ClustalW_InducDist_FastME 1.4278 16.78% 0.4638 1.6156 29.32%
Probcons_InducDist_BioME 1.4286 16.80% 0.4647 1.6164 29.31%
Probcons_InducDist_FastME 1.4288 16.81% 0.4648 1.6178 29.32%
Poa_InducDist_BioME 1.4298 16.86% 0.4654 1.6166 29.38%
Mafft_InducDist_BioNJ 1.4307 16.74% 0.4630 1.6240 29.37%
Poa_InducDist_FastME 1.4311 16.88% 0.4656 1.6178 29.39%
Prank_InducDist_BioME 1.4314 16.81% 0.4643 1.6173 29.27%
Prank_InducDist_FastME 1.4315 16.82% 0.4644 1.6177 29.28%
ClustalO_InducDist_BioNJ 1.4318 16.76% 0.4632 1.6240 29.36%
Probcons_InducDist_BioNJ 1.4336 16.79% 0.4646 1.6266 29.40%
Prograph1_InducDist_FastME 1.4338 16.90% 0.4659 1.6211 29.40%
Prograph1_InducDist_BioME 1.4340 16.89% 0.4658 1.6206 29.39%
ClustalW_InducDist_BioNJ 1.4342 16.77% 0.4638 1.6245 29.38%
Poa_InducDist_BioNJ 1.4348 16.84% 0.4651 1.6251 29.41%
Prank_InducDist_BioNJ 1.4367 16.80% 0.4641 1.6264 29.35%
Prograph1_InducDist_BioNJ 1.4408 16.89% 0.4659 1.6326 29.54%
Probabilistic_InducDist_BioME 1.4416 16.94% 0.4670 1.6317 29.65%
Probabilistic_InducDist_FastME 1.4420 16.94% 0.4670 1.6325 29.65%
ClustalW_InducDist_LST 1.4430 16.80% 0.4643 1.6317 29.41%
Global_BioME 1.4435 17.01% 0.4682 1.6373 29.82%
GlobalWAG_BioME 1.4435 17.02% 0.4687 1.6372 29.84%
Global_FastME 1.4436 17.01% 0.4682 1.6388 29.83%
GlobalWAG_FastME 1.4439 17.03% 0.4688 1.6388 29.86%
Prank_PrankGuide 1.4444 16.76% 0.4625 1.6272 29.17%
Mafft_InducDist_LST 1.4450 16.78% 0.4635 1.6340 29.39%
ClustalO_InducDist_LST 1.4454 16.79% 0.4635 1.6342 29.40%
Prank_InducDist_LST 1.4459 16.83% 0.4645 1.6337 29.37%
GlobalJTT_BioME 1.4465 17.07% 0.4694 1.6429 29.99%
Probcons_InducDist_LST 1.4468 16.83% 0.4649 1.6361 29.43%
Poa_InducDist_LST 1.4468 16.88% 0.4655 1.6341 29.46%
GlobalJTT_FastME 1.4473 17.07% 0.4693 1.6441 30.01%
Global_BioNJ 1.4474 16.99% 0.4678 1.6454 29.86%
LogDelGlobal_BioME 1.4474 17.13% 0.4708 1.6448 30.17%
GlobalWAG_BioNJ 1.4480 17.00% 0.4683 1.6445 29.86%
ClustalO_CodonDist_BioME 1.4481 16.80% 0.4650 1.6571 30.04%
ClustalW_CodonDist_BioME 1.4481 16.81% 0.4653 1.6584 30.10%
ClustalO_CodonDist_FastME 1.4483 16.81% 0.4653 1.6588 30.06%
LogDelGlobal_FastME 1.4483 17.14% 0.4710 1.6464 30.19%
Mafft_CodonDist_FastME 1.4485 16.80% 0.4649 1.6580 30.04%
PartialOrder_InducDist_FastME 1.4488 17.32% 0.4736 1.6414 30.18%
PartialOrder_InducDist_BioME 1.4489 17.31% 0.4734 1.6408 30.17%
Probabilistic_InducDist_BioNJ 1.4489 16.94% 0.4671 1.6444 29.78%
Mafft_CodonDist_BioME 1.4490 16.80% 0.4649 1.6569 30.03%
GlobalLG_BioME 1.4490 17.10% 0.4700 1.6490 30.13%
Global_NJ 1.4490 17.02% 0.4683 1.6483 29.94%
ClustalW_CodonDist_FastME 1.4492 16.82% 0.4654 1.6602 30.12%
Prograph1_InducDist_LST 1.4503 16.92% 0.4660 1.6397 29.56%
GlobalLG_FastME 1.4504 17.11% 0.4704 1.6505 30.14%
Probcons_CodonDist_BioME 1.4505 16.83% 0.4660 1.6598 30.11%
GlobalJTT_BioNJ 1.4507 17.05% 0.4693 1.6496 29.99%
Probcons_CodonDist_FastME 1.4509 16.83% 0.4659 1.6615 30.13%
Poa_CodonDist_FastME 1.4513 16.89% 0.4669 1.6624 30.18%
Poa_CodonDist_BioME 1.4514 16.89% 0.4671 1.6608 30.16%
LogDelGlobal_BioNJ 1.4518 17.12% 0.4709 1.6525 30.21%
Prank_CodonDist_FastME 1.4534 16.88% 0.4664 1.6605 30.04%
Prank_CodonDist_BioME 1.4538 16.87% 0.4663 1.6592 30.02%
PartialOrder_InducDist_BioNJ 1.4538 17.29% 0.4731 1.6478 30.18%
GlobalLG_BioNJ 1.4543 17.08% 0.4696 1.6571 30.15%
Prograph1_CodonDist_BioME 1.4580 16.94% 0.4678 1.6625 30.11%
Prograph1_CodonDist_FastME 1.4583 16.94% 0.4679 1.6642 30.12%
Probabilistic_InducDist_LST 1.4584 16.96% 0.4672 1.6511 29.77%
GlobalWAG_LST 1.4593 17.02% 0.4685 1.6526 29.86%
Global_LST 1.4595 17.01% 0.4682 1.6532 29.87%
PartialOrder_InducDist_LST 1.4609 17.28% 0.4730 1.6524 30.13%
GlobalJTT_LST 1.4623 17.07% 0.4694 1.6570 29.99%
Mafft_CodonDist_BioNJ 1.4625 16.83% 0.4651 1.6723 30.15%
Probabilistic_CodonDist_FastME 1.4626 16.99% 0.4691 1.6753 30.42%
ClustalO_CodonDist_BioNJ 1.4629 16.84% 0.4653 1.6742 30.20%
Probabilistic_CodonDist_BioME 1.4630 16.98% 0.4690 1.6742 30.40%
LogDelGlobal_LST 1.4632 17.13% 0.4705 1.6594 30.19%
ClustalW_CodonDist_BioNJ 1.4634 16.84% 0.4653 1.6761 30.24%
Probcons_CodonDist_BioNJ 1.4642 16.85% 0.4659 1.6754 30.25%
GlobalLG_LST 1.4647 17.10% 0.4700 1.6630 30.13%
Poa_CodonDist_BioNJ 1.4654 16.93% 0.4673 1.6777 30.30%
ClustalW_CodonDist_LST 1.4671 16.82% 0.4653 1.6623 30.02%
Prank_CodonDist_BioNJ 1.4679 16.89% 0.4668 1.6761 30.18%
Mafft_CodonDist_LST 1.4705 16.82% 0.4649 1.6620 29.96%
ClustalO_CodonDist_LST 1.4705 16.85% 0.4657 1.6631 30.00%
Prograph1_CodonDist_BioNJ 1.4717 16.95% 0.4676 1.6798 30.26%
Probcons_CodonDist_LST 1.4728 16.85% 0.4660 1.6654 30.05%
Poa_CodonDist_LST 1.4730 16.94% 0.4676 1.6656 30.10%
Prank_PhyML 1.4733 17.30% 0.4738 1.7164 31.22%
Local_BioME 1.4738 17.32% 0.4733 1.6832 30.69%
Prank_CodonDist_LST 1.4739 16.88% 0.4663 1.6636 29.96%
LocalWAG_BioME 1.4748 17.35% 0.4739 1.6850 30.74%
Local_FastME 1.4750 17.34% 0.4736 1.6851 30.71%
LocalWAG_FastME 1.4753 17.36% 0.4739 1.6865 30.76%
PartialOrder_CodonDist_BioME 1.4753 17.42% 0.4773 1.6835 30.95%
PartialOrder_CodonDist_FastME 1.4763 17.43% 0.4773 1.6850 30.98%
Prank_RAxMLG 1.4780 17.34% 0.4744 1.7235 31.30%
Probabilistic_CodonDist_BioNJ 1.4781 17.00% 0.4692 1.6935 30.57%
Prograph1_CodonDist_LST 1.4782 16.94% 0.4676 1.6682 30.07%
Local_BioNJ 1.4785 17.31% 0.4733 1.6903 30.74%
LocalWAG_BioNJ 1.4799 17.35% 0.4739 1.6928 30.80%
Mafft_PhyML 1.4804 17.49% 0.4767 1.7262 31.56%
Local_NJ 1.4806 17.33% 0.4735 1.6930 30.78%
ClustalO_PhyML 1.4809 17.49% 0.4778 1.7271 31.62%
GlobalCodonPAM_BioME 1.4815 17.17% 0.4725 1.6941 30.87%
GlobalCodonPAM_FastME 1.4821 17.16% 0.4724 1.6956 30.89%
ClustalW_PhyML 1.4823 17.55% 0.4790 1.7292 31.69%
Prograph1_PhyML 1.4828 17.50% 0.4771 1.7259 31.49%
Poa_PhyML 1.4832 17.54% 0.4783 1.7297 31.63%
Probcons_PhyML 1.4837 17.56% 0.4788 1.7296 31.70%
LogDelLocal_BioME 1.4837 17.55% 0.4774 1.6970 31.16%
Probabilistic_CodonDist_LST 1.4843 17.01% 0.4689 1.6812 30.38%
LogDelLocal_FastME 1.4856 17.55% 0.4775 1.6987 31.18%
LocalLG_BioME 1.4859 17.53% 0.4768 1.7014 31.13%
Mafft_RAxMLG 1.4862 17.53% 0.4773 1.7361 31.67%
LocalLG_FastME 1.4866 17.54% 0.4770 1.7023 31.14%
LocalJTT_BioME 1.4872 17.57% 0.4776 1.6980 31.04%
Local_LST 1.4879 17.31% 0.4731 1.6956 30.70%
Prograph1_RAxMLG 1.4880 17.54% 0.4778 1.7351 31.59%
ClustalO_RAxMLG 1.4882 17.55% 0.4782 1.7371 31.72%
LocalWAG_LST 1.4883 17.34% 0.4733 1.6966 30.74%
Probabilistic_PhyML 1.4885 17.63% 0.4802 1.7342 31.77%
PartialOrder_CodonDist_BioNJ 1.4885 17.44% 0.4770 1.7003 31.06%
LocalJTT_FastME 1.4887 17.58% 0.4776 1.6998 31.06%
Poa_RAxMLG 1.4889 17.58% 0.4789 1.7402 31.74%
ClustalW_RAxMLG 1.4894 17.62% 0.4796 1.7392 31.79%
LogDelLocal_BioNJ 1.4895 17.56% 0.4774 1.7034 31.19%
ClustalO_RAxML 1.4897 17.80% 0.4823 1.7384 31.95%
Probcons_RAxMLG 1.4901 17.60% 0.4791 1.7408 31.82%
ClustalW_RAxML 1.4904 17.83% 0.4832 1.7400 32.00%
LocalLG_BioNJ 1.4917 17.53% 0.4771 1.7085 31.15%
PartialOrder_CodonDist_LST 1.4918 17.41% 0.4765 1.6844 30.78%
LocalJTT_BioNJ 1.4927 17.56% 0.4774 1.7053 31.07%
Probcons_RAxML 1.4929 17.89% 0.4836 1.7420 32.07%
Prank_Parsimony 1.4934 17.36% 0.4730 1.7379 31.34%
Poa_RAxML 1.4939 17.85% 0.4830 1.7441 32.07%
Prograph1_RAxML 1.4942 17.82% 0.4821 1.7412 31.95%
LogDelLocal_LST 1.4944 17.50% 0.4765 1.7047 31.06%
Prograph1_Parsimony 1.4948 17.40% 0.4742 1.7366 31.30%
Probabilistic_RAxMLG 1.4950 17.67% 0.4804 1.7439 31.86%
GlobalCodonPAM_BioNJ 1.4951 17.18% 0.4723 1.7056 30.91%
Prank_RAxML 1.4956 18.17% 0.4878 1.7357 31.96%
LocalLG_LST 1.4973 17.48% 0.4762 1.7086 31.04%
LocalJTT_LST 1.4986 17.52% 0.4765 1.7063 30.96%
Mafft_RAxML 1.5006 18.30% 0.4898 1.7437 32.22%
GlobalCodonPAM_LST 1.5022 17.16% 0.4717 1.6930 30.68%
Probabilistic_RAxML 1.5074 18.40% 0.4921 1.7490 32.32%
ClustalW_Parsimony 1.5105 17.63% 0.4786 1.7603 31.90%
Probabilistic_Parsimony 1.5109 17.56% 0.4770 1.7618 31.88%
PartialOrder_PhyML 1.5153 18.37% 0.4923 1.7581 32.53%
Mafft_Parsimony 1.5220 17.75% 0.4804 1.7713 32.10%
ClustalO_Parsimony 1.5226 17.75% 0.4803 1.7728 32.12%
PartialOrder_RAxMLG 1.5231 18.38% 0.4923 1.7681 32.61%
Poa_Parsimony 1.5257 17.87% 0.4823 1.7779 32.28%
Probcons_Parsimony 1.5301 17.84% 0.4823 1.7823 32.32%
PartialOrder_RAxML 1.5374 19.12% 0.5039 1.7771 33.18%
PartialOrder_Parsimony 1.5543 18.08% 0.4873 1.8205 32.79%
LocalCodonPAM_LST 1.5741 18.29% 0.4886 1.7544 32.02%
LocalCodonPAM_BioME 1.5749 18.54% 0.4916 1.7766 32.63%
LocalCodonPAM_FastME 1.5749 18.54% 0.4917 1.7788 32.66%
LocalCodonPAM_BioNJ 1.5913 18.60% 0.4924 1.7853 32.58%
Prograph1_Gap 1.9433 21.39% 0.5260 2.4423 45.15%
Prank_Gap 1.9785 21.75% 0.5299 2.4897 46.18%
Poa_Gap 2.3287 25.84% 0.5777 2.7803 52.61%
Probabilistic_Gap 2.3428 26.34% 0.5818 2.7972 53.64%
PartialOrder_Gap 2.4197 24.94% 0.5591 2.8379 51.69%
ClustalW_Gap 2.5021 27.89% 0.5982 2.9157 56.10%
Mafft_Gap 2.5251 27.01% 0.5850 2.9296 55.42%
ClustalO_Gap 2.5572 27.63% 0.5921 2.9586 56.38%
Probcons_Gap 2.5816 28.39% 0.6012 2.9752 57.11%
GlobalSynPAM_LST 2.6621 30.23% 0.6191 2.5864 48.01%
LocalSynPAM_LST 2.6831 30.51% 0.6209 2.6048 48.36%
GlobalSynPAM_BioNJ 2.8077 30.97% 0.6218 2.8184 51.99%
LocalSynPAM_BioNJ 2.8226 31.21% 0.6238 2.8305 52.25%
GlobalSynPAM_BioME 2.8493 31.80% 0.6272 2.8923 54.71%
GlobalSynPAM_FastME 2.8601 31.88% 0.6276 2.9101 55.07%
LocalSynPAM_BioME 2.8607 31.97% 0.6285 2.9007 54.80%
LocalSynPAM_FastME 2.8773 32.07% 0.6289 2.9244 55.25%
Method Taxon RF Taxon 0-1 Intra
PartialOrder_CodonDist_BioNJ 2.2812 20.25% 0.5524 3.1378 39.11%
PartialOrder_CodonDist_BioME 2.2940 20.43% 0.5551 3.1490 39.43%
Prank_CodonDist_BioNJ 2.2949 20.18% 0.5500 3.1932 39.45%
PartialOrder_CodonDist_FastME 2.3042 20.47% 0.5554 3.1604 39.52%
PartialOrder_CodonDist_LST 2.3069 20.24% 0.5509 3.1061 38.65%
Prank_CodonDist_BioME 2.3103 20.37% 0.5533 3.2056 39.60%
Prank_CodonDist_LST 2.3123 20.15% 0.5492 3.1532 38.89%
GlobalCodonPAM_BioNJ 2.3155 20.47% 0.5545 3.1970 39.76%
Prank_CodonDist_FastME 2.3202 20.40% 0.5532 3.2164 39.67%
GlobalCodonPAM_BioME 2.3320 20.67% 0.5565 3.2058 40.05%
Prograph1_CodonDist_BioNJ 2.3362 20.19% 0.5491 3.2380 39.58%
GlobalCodonPAM_LST 2.3393 20.42% 0.5521 3.1599 39.25%
GlobalCodonPAM_FastME 2.3445 20.73% 0.5566 3.2180 40.16%
Prograph1_CodonDist_BioME 2.3482 20.35% 0.5514 3.2457 39.71%
Prograph1_CodonDist_FastME 2.3570 20.38% 0.5512 3.2527 39.76%
Prograph1_CodonDist_LST 2.3604 20.19% 0.5477 3.2084 39.14%
LocalCodonPAM_BioNJ 2.3634 20.89% 0.5579 3.2110 40.02%
LocalCodonPAM_BioME 2.3766 21.07% 0.5604 3.2148 40.23%
LocalCodonPAM_LST 2.3785 20.78% 0.5559 3.1685 39.43%
Mafft_CodonDist_BioNJ 2.3811 21.00% 0.5577 3.3489 41.02%
Probabilistic_CodonDist_BioNJ 2.3833 20.91% 0.5558 3.3162 40.94%
LocalCodonPAM_FastME 2.3873 21.12% 0.5605 3.2262 40.33%
Mafft_CodonDist_LST 2.3935 20.94% 0.5563 3.3051 40.47%
Mafft_CodonDist_BioME 2.4052 21.21% 0.5600 3.3661 41.25%
Probabilistic_CodonDist_BioME 2.4062 21.12% 0.5582 3.3381 41.24%
Probabilistic_CodonDist_LST 2.4081 20.89% 0.5546 3.2916 40.52%
Probcons_CodonDist_BioNJ 2.4086 21.00% 0.5561 3.3803 41.23%
Mafft_CodonDist_FastME 2.4146 21.24% 0.5598 3.3771 41.33%
Probabilistic_CodonDist_FastME 2.4165 21.16% 0.5583 3.3514 41.34%
Probcons_CodonDist_LST 2.4188 20.93% 0.5549 3.3364 40.70%
ClustalO_CodonDist_BioNJ 2.4205 21.26% 0.5583 3.4025 41.60%
ClustalO_CodonDist_LST 2.4294 21.16% 0.5567 3.3563 41.01%
Probcons_CodonDist_BioME 2.4393 21.24% 0.5593 3.4079 41.57%
ClustalO_CodonDist_BioME 2.4480 21.52% 0.5611 3.4249 41.86%
Probcons_CodonDist_FastME 2.4500 21.26% 0.5591 3.4202 41.65%
ClustalO_CodonDist_FastME 2.4595 21.56% 0.5611 3.4370 41.95%
Poa_CodonDist_BioNJ 2.4992 21.91% 0.5629 3.4742 42.31%
Poa_CodonDist_LST 2.5005 21.85% 0.5617 3.4225 41.76%
Poa_CodonDist_BioME 2.5280 22.17% 0.5653 3.5039 42.68%
Poa_CodonDist_FastME 2.5356 22.20% 0.5651 3.5138 42.76%
Prank_RAxMLG 2.5551 21.40% 0.5417 3.8823 45.94%
Prank_PhyML 2.5564 21.40% 0.5424 3.8813 45.93%
Prank_RAxML 2.5871 22.23% 0.5539 3.9048 46.68%
Mafft_PhyML 2.6215 22.03% 0.5475 3.9799 47.06%
Mafft_RAxMLG 2.6283 22.05% 0.5468 3.9867 47.14%
ClustalW_CodonDist_BioNJ 2.6422 22.47% 0.5631 3.7195 44.12%
Probabilistic_PhyML 2.6445 22.01% 0.5471 3.9893 47.09%
PartialOrder_PhyML 2.6466 22.06% 0.5491 3.9623 47.03%
Mafft_RAxML 2.6470 22.74% 0.5565 3.9980 47.78%
Probabilistic_RAxMLG 2.6494 21.98% 0.5465 3.9974 47.17%
Probcons_PhyML 2.6509 22.16% 0.5482 4.0128 47.39%
ClustalW_CodonDist_LST 2.6516 22.41% 0.5623 3.6854 43.66%
PartialOrder_RAxMLG 2.6543 22.10% 0.5492 3.9743 47.17%
Prograph1_PhyML 2.6589 21.77% 0.5434 4.0053 46.91%
Prograph1_RAxMLG 2.6618 21.76% 0.5435 4.0155 47.02%
Probabilistic_RAxML 2.6641 22.60% 0.5558 4.0059 47.75%
Probcons_RAxMLG 2.6653 22.25% 0.5477 4.0258 47.53%
ClustalO_PhyML 2.6661 22.44% 0.5504 4.0345 47.66%
ClustalW_CodonDist_BioME 2.6729 22.74% 0.5662 3.7448 44.39%
Probcons_RAxML 2.6758 22.82% 0.5563 4.0312 48.04%
PartialOrder_RAxML 2.6764 22.87% 0.5594 3.9887 47.83%
ClustalO_RAxMLG 2.6768 22.45% 0.5497 4.0466 47.81%
ClustalW_CodonDist_FastME 2.6829 22.78% 0.5662 3.7554 44.47%
Prograph1_RAxML 2.6848 22.49% 0.5534 4.0284 47.66%
ClustalO_RAxML 2.6859 22.95% 0.5578 4.0453 48.22%
Poa_PhyML 2.7723 23.26% 0.5574 4.1128 48.54%
Poa_RAxMLG 2.7870 23.33% 0.5573 4.1280 48.70%
Poa_RAxML 2.7972 23.77% 0.5641 4.1323 49.10%
PartialOrder_InducDist_BioNJ 2.8486 22.72% 0.5518 4.0863 47.74%
PartialOrder_InducDist_BioME 2.8513 22.82% 0.5532 4.0824 47.73%
PartialOrder_InducDist_LST 2.8539 22.67% 0.5509 4.0550 47.26%
PartialOrder_InducDist_FastME 2.8566 22.83% 0.5531 4.0869 47.77%
ClustalW_PhyML 2.8682 23.54% 0.5572 4.2573 49.54%
Prank_InducDist_LST 2.8697 22.53% 0.5476 4.0833 47.19%
Prank_InducDist_BioME 2.8739 22.66% 0.5492 4.1142 47.54%
Prank_InducDist_BioNJ 2.8750 22.63% 0.5485 4.1233 47.68%
Prank_InducDist_FastME 2.8788 22.69% 0.5495 4.1202 47.60%
ClustalW_RAxMLG 2.8821 23.54% 0.5562 4.2710 49.65%
Prank_PrankGuide 2.8831 22.46% 0.5464 4.0804 47.16%
ClustalW_RAxML 2.8915 23.90% 0.5613 4.2771 50.04%
Prograph1_InducDist_BioME 2.9224 22.65% 0.5473 4.1828 47.96%
Prograph1_InducDist_BioNJ 2.9236 22.62% 0.5466 4.1902 48.12%
GlobalJTT_LST 2.9260 23.21% 0.5547 4.1389 48.32%
Prograph1_InducDist_FastME 2.9286 22.66% 0.5473 4.1872 47.99%
GlobalJTT_BioNJ 2.9316 23.34% 0.5552 4.1770 48.81%
Prograph1_InducDist_LST 2.9324 22.57% 0.5458 4.1685 47.77%
GlobalJTT_BioME 2.9341 23.43% 0.5567 4.1737 48.83%
GlobalWAG_BioNJ 2.9416 23.34% 0.5544 4.1848 48.88%
GlobalWAG_LST 2.9424 23.27% 0.5543 4.1488 48.39%
GlobalJTT_FastME 2.9441 23.48% 0.5571 4.1841 48.92%
GlobalWAG_BioME 2.9444 23.44% 0.5562 4.1813 48.84%
GlobalLG_LST 2.9502 23.48% 0.5577 4.1604 48.68%
Global_BioNJ 2.9526 23.48% 0.5563 4.1963 48.99%
Global_LST 2.9530 23.38% 0.5550 4.1574 48.50%
GlobalWAG_FastME 2.9560 23.49% 0.5565 4.1937 48.95%
Global_BioME 2.9562 23.54% 0.5570 4.1932 48.98%
GlobalLG_BioNJ 2.9566 23.58% 0.5580 4.2009 49.19%
Global_FastME 2.9651 23.57% 0.5570 4.2033 49.08%
GlobalLG_BioME 2.9675 23.71% 0.5600 4.2011 49.22%
GlobalLG_FastME 2.9754 23.73% 0.5600 4.2117 49.32%
Global_NJ 2.9831 23.65% 0.5571 4.2241 49.39%
Mafft_InducDist_LST 2.9880 23.41% 0.5536 4.2495 48.94%
LocalJTT_LST 2.9926 23.63% 0.5582 4.1898 48.96%
Mafft_InducDist_BioNJ 2.9979 23.51% 0.5538 4.2970 49.46%
LogDelGlobal_BioME 3.0003 23.90% 0.5606 4.2157 49.62%
Mafft_InducDist_BioME 3.0031 23.58% 0.5549 4.2901 49.32%
LogDelGlobal_LST 3.0041 23.74% 0.5594 4.1930 49.20%
Probabilistic_InducDist_BioME 3.0041 23.75% 0.5574 4.2610 49.52%
Probabilistic_InducDist_BioNJ 3.0045 23.69% 0.5561 4.2621 49.55%
LogDelGlobal_FastME 3.0052 23.91% 0.5606 4.2223 49.67%
Probabilistic_InducDist_FastME 3.0086 23.75% 0.5573 4.2673 49.56%
LocalWAG_LST 3.0094 23.66% 0.5582 4.2019 49.06%
Probabilistic_InducDist_LST 3.0094 23.63% 0.5561 4.2414 49.22%
Mafft_InducDist_FastME 3.0124 23.60% 0.5547 4.2986 49.39%
LogDelGlobal_BioNJ 3.0127 23.83% 0.5593 4.2454 49.82%
LocalJTT_BioNJ 3.0132 23.82% 0.5595 4.2476 49.65%
LocalJTT_BioME 3.0143 23.87% 0.5601 4.2352 49.53%
Local_LST 3.0154 23.67% 0.5572 4.2069 49.07%
LocalLG_LST 3.0189 23.81% 0.5597 4.2167 49.33%
LocalWAG_BioME 3.0214 23.88% 0.5598 4.2421 49.55%
LocalJTT_FastME 3.0218 23.91% 0.5604 4.2426 49.60%
LocalWAG_BioNJ 3.0260 23.83% 0.5588 4.2574 49.71%
Probcons_InducDist_LST 3.0276 23.47% 0.5530 4.2897 49.24%
Local_BioME 3.0277 23.87% 0.5588 4.2485 49.61%
Local_BioNJ 3.0294 23.81% 0.5582 4.2636 49.75%
LocalWAG_FastME 3.0294 23.90% 0.5598 4.2506 49.63%
Local_FastME 3.0370 23.92% 0.5592 4.2565 49.67%
LocalLG_BioME 3.0403 24.10% 0.5619 4.2607 49.91%
LocalLG_BioNJ 3.0424 24.00% 0.5606 4.2776 50.06%
Probcons_InducDist_BioNJ 3.0435 23.58% 0.5530 4.3357 49.75%
LogDelLocal_LST 3.0466 24.00% 0.5606 4.2283 49.59%
Probcons_InducDist_BioME 3.0490 23.66% 0.5542 4.3342 49.70%
Local_NJ 3.0493 23.95% 0.5591 4.2748 49.97%
LogDelLocal_BioME 3.0518 24.18% 0.5620 4.2584 50.05%
ClustalO_InducDist_LST 3.0520 23.70% 0.5546 4.3168 49.59%
LocalLG_FastME 3.0524 24.14% 0.5619 4.2721 50.00%
Probcons_InducDist_FastME 3.0593 23.71% 0.5544 4.3447 49.80%
ClustalO_InducDist_BioNJ 3.0623 23.82% 0.5552 4.3603 50.07%
LogDelLocal_FastME 3.0628 24.22% 0.5621 4.2679 50.13%
ClustalO_InducDist_BioME 3.0674 23.90% 0.5565 4.3558 50.01%
LogDelLocal_BioNJ 3.0684 24.16% 0.5610 4.2913 50.31%
ClustalO_InducDist_FastME 3.0739 23.94% 0.5567 4.3618 50.06%
Poa_InducDist_LST 3.1107 24.27% 0.5591 4.3594 50.08%
Poa_InducDist_BioNJ 3.1240 24.38% 0.5593 4.3979 50.51%
Poa_InducDist_BioME 3.1344 24.49% 0.5605 4.4035 50.54%
Poa_InducDist_FastME 3.1409 24.51% 0.5607 4.4117 50.62%
ClustalW_InducDist_LST 3.2044 24.57% 0.5585 4.5147 51.29%
ClustalW_InducDist_BioNJ 3.2100 24.69% 0.5597 4.5406 51.66%
ClustalW_InducDist_BioME 3.2189 24.79% 0.5609 4.5416 51.61%
ClustalW_InducDist_FastME 3.2252 24.80% 0.5608 4.5485 51.67%
GlobalSynPAM_LST 3.5173 31.10% 0.6338 3.9687 50.34%
LocalSynPAM_LST 3.5271 31.11% 0.6334 3.9732 50.35%
Prograph1_Parsimony 3.6661 27.24% 0.5749 4.8664 55.21%
GlobalSynPAM_BioNJ 3.7288 31.89% 0.6350 4.1870 52.87%
LocalSynPAM_BioNJ 3.7325 31.85% 0.6342 4.1860 52.82%
LocalSynPAM_BioME 3.9135 32.87% 0.6370 4.4534 55.73%
GlobalSynPAM_BioME 3.9186 32.95% 0.6384 4.4700 56.00%
LocalSynPAM_FastME 3.9554 33.01% 0.6372 4.4974 56.11%
GlobalSynPAM_FastME 3.9586 33.08% 0.6386 4.5120 56.32%
Prank_Parsimony 4.1293 30.16% 0.5895 5.2537 59.34%
Probabilistic_Parsimony 4.2511 31.26% 0.5968 5.3638 60.93%
ClustalW_Parsimony 4.2646 31.42% 0.5993 5.3851 61.15%
Mafft_Parsimony 4.3086 31.86% 0.6027 5.3770 61.22%
ClustalO_Parsimony 4.3105 31.79% 0.6007 5.3842 61.27%
Probcons_Parsimony 4.3464 32.23% 0.6050 5.4023 61.60%
Poa_Parsimony 4.3852 32.52% 0.6067 5.4298 61.97%
PartialOrder_Parsimony 4.4223 32.34% 0.6057 5.4796 62.40%
Prograph1_Gap 4.8752 35.60% 0.6223 5.8352 67.80%
Prank_Gap 5.6787 40.79% 0.6442 6.3558 73.73%
PartialOrder_Gap 5.7425 41.19% 0.6477 6.3644 74.18%
Probabilistic_Gap 5.9593 45.15% 0.6773 6.4529 76.15%
Poa_Gap 6.2008 46.51% 0.6820 6.5492 77.39%
ClustalW_Gap 6.2522 47.55% 0.6892 6.5718 77.93%
ClustalO_Gap 6.2747 47.15% 0.6837 6.5759 77.85%
Mafft_Gap 6.2803 46.87% 0.6813 6.5867 77.88%
Probcons_Gap 6.3514 48.04% 0.6901 6.6129 78.48%

Gonnet

Gonnet BMC Bioinformatics 2012 13:148   doi:10.1186/1471-2105-13-148

Open Data