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Open Access Software

EGNAS: an exhaustive DNA sequence design algorithm

Alfred Kick12, Martin Bönsch1 and Michael Mertig12*

Author Affiliations

1 Professur für Physikalische Chemie, Mess- und Sensortechnik, Technische Universität Dresden, Dresden 01062, Germany

2 Kurt-Schwabe-Institut für Mess- und Sensortechnik e.V. Meinsberg, Kurt-Schwabe-Straße 4, Ziegra-Knobelsdorf 04720, Germany

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BMC Bioinformatics 2012, 13:138  doi:10.1186/1471-2105-13-138

Published: 20 June 2012

Additional files

Additional file 1:

Manual for the use of EGNAS. This DOC file contains the manual for the use of EGNAS. The sequence design criteria and options are explained [27,28].

Format: DOC Size: 20KB Download file

This file can be viewed with: Microsoft Word Viewer

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Additional file 2:

Executable file for LINUX operating systems. This ZIP file contains the executable file of EGNAS for LINUX operating systems.

Format: ZIP Size: 51KB Download file

Open Data

Additional file 3:

Executable file for MAC OS X operating systems. This ZIP file contains the executable file of EGNAS for MAC OS X operating systems.

Format: ZIP Size: 46KB Download file

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Additional file 4:

Executable file for MICROSOFT WINDOWS operating systems. This ZIP file contains the executable file of EGNAS for MICROSOFT WINDOWS operating systems.

Format: ZIP Size: 196KB Download file

Open Data

Additional file 5:

SBE-TAGs and primer sequences. This MICROSOFT OFFICE EXCEL 2003 sheet contains SBE-TAGs and primer sequences as well as the molar free enthalpies of the most stable hairpins.

Format: XLS Size: 63KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional file 6:

SNPs and PCR primer sequences. This MICROSOFT OFFICE EXCEL 2003 sheet contains SNPs and PCR primer sequences as well as the molar free enthalpies of the most stable hairpins.

Format: XLS Size: 34KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 7:

Sequences for triangular DNA origami. This MICROSOFT OFFICE EXCEL 2003 sheet contains the sticky end sequences for triangular DNA origami. The sequences of staple strands are shown before and after modification. Their molar free enthalpies of the most stable hairpins are presented.

Format: XLS Size: 15KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8:

Sequences for DNA origami forming six-helix bundle nanotubes. This MICROSOFT OFFICE EXCEL 2003 sheet contains the capture probe sequences for DNA origami forming six-helix bundle nanotubes. The sequences of staple strands are shown before and after modification. Their molar free enthalpies of the most stable hairpins are presented.

Format: XLS Size: 11KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data