Table 3

The proportion of DE genes (p1 = 0.05), MR, FPR, FNR with controlled value of FDR at 0.01, and pAUC (at FPR ≤ 0.2) for EB and β -EB approaches averaged over the 50 simulated datasets from the gamma distribution
p MR FPR FNR pAUC
In the case of model mis-specification
EB-LNN 0.0309 0.0287 0.0002 0.5776 0.1359
(0.00054) (0.0004) (0.00004) (0.0081) (0.0013)
β-EB 0.0371 0.0281 0.0002 0.5704 0.1361
(0.0006) (0.00038) (0.00004) (0.008) (0.0014)

The genes with the posterior probabilities of DE ≥ 0.674 for EB-LNN and posterior probabilities of DE ≥ 0.902 for β−EB by controlling FDR at 0.01. The numbers in parentheses are the standard errors for the 50 simulation trails.

Hossain Mollah et al.

Hossain Mollah et al. BMC Bioinformatics 2012 13:135   doi:10.1186/1471-2105-13-135

Open Data