Table 3 |
|||||
| The proportion of DE genes (p1 = 0.05), MR, FPR, FNR with controlled value of FDR at 0.01, and pAUC (at FPR ≤ 0.2) for EB and β -EB approaches averaged over the 50 simulated datasets from the gamma distribution | |||||
| p | MR | FPR | FNR | pAUC | |
| In the case of model mis-specification | |||||
| EB-LNN | 0.0309 | 0.0287 | 0.0002 | 0.5776 | 0.1359 |
| (0.00054) | (0.0004) | (0.00004) | (0.0081) | (0.0013) | |
| β-EB | 0.0371 | 0.0281 | 0.0002 | 0.5704 | 0.1361 |
| (0.0006) | (0.00038) | (0.00004) | (0.008) | (0.0014) | |
The genes with the posterior probabilities of DE ≥ 0.674 for EB-LNN and posterior probabilities of DE ≥ 0.902 for β−EB by controlling FDR at 0.01. The numbers in parentheses are the standard errors for the 50 simulation trails.
Hossain Mollah et al. BMC Bioinformatics 2012 13:135 doi:10.1186/1471-2105-13-135
