Table 3

ROCS results for the number of Indicator Prey Proteins, Reproducible Experimental Replicates, and joint inclusion probability <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M203','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M203">View MathML</a> at various experimental scales K in each AP-MS control and bait experiments: STK24, PPM1B, NME2, CTNNBIP1, VHL, and CONTROL

Bait Experiment with experimental

scale K (<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M204','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M204">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M205','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M205">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M206','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M206">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M207','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M207">View MathML</a>

# Total Indicator Prey Proteins

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M208','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M208">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M209','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M209">View MathML</a>

Bait Marginal Inclusion Probability Threshold

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M210','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M210">View MathML</a> or <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M211','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M211">View MathML</a>

# Selected Indicator Prey Proteins

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M212','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M212">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M213','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M213">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M214','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M214">View MathML</a> or <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M215','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M215">View MathML</a>

# Reproducible Experimental Replicates

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M216','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M216">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M217','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M217">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M218','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M218">View MathML</a>or<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M219','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M219">View MathML</a>

Joint Inclusion Probability

5 (STK24) 145 0.80 24 (16.6%) 3 ( 60.0%) 0.007
6 (PPM1B) 71 0.80 7 ( 9.9%) 3 ( 50.0%) 0.480
8 (NME2) 145 0.80 4 ( 2.8%) 8 (100.0%) 1.000
9 (CTNNBIP1) 107 0.75 11 (10.3%) 5 ( 55.5%) 0.540
33 (VHL) 597 0.75 15 ( 2.5%) 11 ( 33.3%) 0.070
200 (CONTROL) 542 0.75 4 ( 0.7%) 124 ( 62.0%) 0.550

Results are reported for the marginal inclusion probability thresholds <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M220','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M220">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M221','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M221">View MathML</a> as determined in each AP-MS bait experiment.

Dazard et al.

Dazard et al. BMC Bioinformatics 2012 13:128   doi:10.1186/1471-2105-13-128

Open Data