Table 2

Identification of Indicator Prey Proteins <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M165','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M165">View MathML</a>, <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M166','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M166">View MathML</a> and Reproducible Experimental Replicates <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M167','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M167">View MathML</a>, <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M168','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M168">View MathML</a>, and joint inclusion probabilities <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M169','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M169">View MathML</a>, <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M170','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M170">View MathML</a> for a range of marginal inclusion probability thresholds <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M171','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M171">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M172','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M172">View MathML</a> in the control and CTNNBIP1 bait experiments respectively
<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M173','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M173">View MathML</a>Marginal Inclusion Probability Threshold

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M174','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M174">View MathML</a>

# Selected Indicator Prey Proteins

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M175','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M175">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M176','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M176">View MathML</a>

# Reproducible Experimental Replicates

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M177','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M177">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M178','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M178">View MathML</a>

Joint Inclusion Probability

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M179','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M179">View MathML</a>

Marginal Inclusion Probability Threshold

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M180','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M180">View MathML</a>

# Selected Indicator Prey Proteins

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M181','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M181">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M182','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M182">View MathML</a>

Reproducible Experimental Replicates

(% of <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M183','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M183">View MathML</a>)

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M184','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M184">View MathML</a>

Joint Inclusion Probability

1.00 0 (0.0%) 200 (100.0%) 1.000 1.00 8 (7.5%) 9 (100.0%) 1.000
0.95 2 (0.4%) 191 (95.5%) 0.926 0.95 8 (7.5%) 9 (100.0%) 1.000
0.90 2 (0.4%) 191 (95.5%) 0.926 0.90 8 (7.5%) 9 (100.0%) 1.000
0.85 2 (0.4%) 191 (95.5%) 0.926 0.85 9 (8.4%) 8 (88.9%) 0.889
0.80 2 (0.4%) 191 (95.5%) 0.926 0.80 9 (8.4%) 8 (88.9%) 0.889
0.75 4 (0.7%) 124 (62.0%) 0.549 0.75 11 (10.3%) 5 (55.6%) 0.538
0.70 6 (1.1%) 94 (47.0%) 0.305 0.70 11 (10.3%) 5 (55.6%) 0.538
0.65 6 (1.1%) 94 (47.0%) 0.305 0.65 16 (15.0%) 2 (22.2%) 0.071
0.60 7 (1.3%) 70 (35.0%) 0.195 0.60 16 (15.0%) 2 (22.2%) 0.071
0.55 9 (1.7%) 35 (17.5%) 0.063 0.55 20 (18.7%) 2 (22.2%) 0.007
0.50 12 (2.2%) 23 (11.5%) 0.009 0.50 20 (18.7%) 2 (22.2%) 0.007
0.45 14 (2.6%) 18 (9.0%) 0.002 0.45 20 (18.7%) 2 (22.2%) 0.007
0.40 14 (2.6%) 18 (9.0%) 0.002 0.40 26 (24.3%) 0 (0.0%) 0.000
0.35 20 (3.7%) 3 (1.5%) 0.000 0.35 26 (24.3%) 0 (0.0%) 0.000
0.30 25 (4.6%) 0 (0.0%) 0.000 0.30 35 (32.7%) 0 (0.0%) 0.000
0.25 30 (5.5%) 0 (0.0%) 0.000 0.25 35 (32.7%) 0 (0.0%) 0.000
0.20 34 (6.3%) 0 (0.0%) 0.000 0.20 49 (45.8%) 0 (0.0%) 0.000
0.15 43 (7.9%) 0 (0.0%) 0.000 0.15 49 (45.8%) 0 (0.0%) 0.000
0.10 59 (10.9%) 0 (0.0%) 0.000 0.10 107 (100.0%) 0 (0.0%) 0.000
0.05 91 (16.8%) 0 (0.0%) 0.000 0.05 107 (100.0%) 0 (0.0%) 0.000
0.00 542 (100.0%) 0 (0.0%) 0.000 0.00 107 (100.0%) 0 (0.0%) 0.000

Text in italic represents the prohibited choices for the marginal inclusion probability thresholds <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M185','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M185">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M186','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M186">View MathML</a> (see equation (4)), and bold texts represent the choices <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M187','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M187">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M188','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M188">View MathML</a>.

Dazard et al.

Dazard et al. BMC Bioinformatics 2012 13:128   doi:10.1186/1471-2105-13-128

Open Data