Table 1

ROCS results for the number of Experimental Replicates and Prey Proteins as a function of procedural stages from the initial “Naïve” stage (“N”), to the “Reproducible” stage (“R”), and to the final “Specific” stage (“S”) for all the AP-MS bait experiments: VHL, CTNNBIP1, NME2, PPM1B, and STK24
Stages Stage N Stage R Stage S
Bait Experiment

Experimental Replicates

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M127','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M127">View MathML</a>

Prey Proteins

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M128','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M128">View MathML</a>

Reproducible Experimental Replicates

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M129','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M129">View MathML</a>

Reproducible Prey Proteins

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M130','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M130">View MathML</a>

Reproducible Experimental Replicates

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M131','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M131">View MathML</a>

Specific Prey Proteins

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M132','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M132">View MathML</a>

<a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M133','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M133">View MathML</a>
STK24 5 824 3 141 3 112 (0.13)
PPM1B 6 965 3 111 3 76 (0.08)
NME2 8 1349 8 329 8 260 (0.09)
CTNNBIP1 9 1229 5 106 5 69 (0.15)
VHL 33 5398 11 323 11 43 (0.14)

Results are reported for <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M134','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M134">View MathML</a> and the marginal inclusion probability thresholds <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M135','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M135">View MathML</a> and <a onClick="popup('http://www.biomedcentral.com/1471-2105/13/128/mathml/M136','MathML',630,470);return false;" target="_blank" href="http://www.biomedcentral.com/1471-2105/13/128/mathml/M136">View MathML</a> as determined in each AP-MS bait experiment.

Dazard et al.

Dazard et al. BMC Bioinformatics 2012 13:128   doi:10.1186/1471-2105-13-128

Open Data