Table 1

Performance of top scoring methods across all alignment performance tests
Method Rank in Benchmark Test Rank in Tree Resolution Test Rank in Topological Congruence Test Rank in Structural Accuracy Test Mean rank
MergeAlign91 8 20 2 9 9.8
MergeAlign80 9 8 9 14 10.0
MergeAlign70 5 14 17 5 10.3
MergeAlign30 1 23 10 11 11.3
MergeAlign60 3 31 6 8 12.0
CROG050101 13 5 29 6 13.3
CombAlign40 2 32 20 4 14.5
DOSZ010104 11 44 4 1 15.0
MergeAlign50 7 26 21 10 16.0
OVEJ920101 20 25 8 12 16.3
JOHM930101 21 12 15 18 16.5
MergeAlign20 6 11 37 13 16.8
BLOSUM80 22 22 1 24 17.3
BLOSUM62 18 10 27 22 19.3
MergeAlign10 10 6 57 7 20.0
PRLA000102 12 33 24 19 22.0
CSEM940101 24 15 47 3 22.3
DOSZ010103 4 27 60 2 23.3
PRLA000101 17 9 59 15 25.0
HENS920103 26 34 12 32 26.0

Collingridge and Kelly

Collingridge and Kelly BMC Bioinformatics 2012 13:117   doi:10.1186/1471-2105-13-117

Open Data