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Open Access Software

OLSVis: an animated, interactive visual browser for bio-ontologies

Steven Vercruysse*, Aravind Venkatesan and Martin Kuiper

Author Affiliations

Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway

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BMC Bioinformatics 2012, 13:116  doi:10.1186/1471-2105-13-116

Published: 30 May 2012

Abstract

Background

More than one million terms from biomedical ontologies and controlled vocabularies are available through the Ontology Lookup Service (OLS). Although OLS provides ample possibility for querying and browsing terms, the visualization of parts of the ontology graphs is rather limited and inflexible.

Results

We created the OLSVis web application, a visualiser for browsing all ontologies available in the OLS database. OLSVis shows customisable subgraphs of the OLS ontologies. Subgraphs are animated via a real-time force-based layout algorithm which is fully interactive: each time the user makes a change, e.g. browsing to a new term, hiding, adding, or dragging terms, the algorithm performs smooth and only essential reorganisations of the graph. This assures an optimal viewing experience, because subsequent screen layouts are not grossly altered, and users can easily navigate through the graph. URL: http://ols.wordvis.com webcite

Conclusions

The OLSVis web application provides a user-friendly tool to visualise ontologies from the OLS repository. It broadens the possibilities to investigate and select ontology subgraphs through a smooth visualisation method.

Keywords:
Bio-ontologies; Visualisation; Browsing; Web application