Table 4

Thresholds used in fold recognition programs for classification of potentially good, medium and poor alignments
Predicted alignment quality
Method Good Medium Poor
PSI-BLAST* < 2e-06 < 0.023 > 0.023
FFAS <−34.5 < −8.5 > − 8.5
MGenThreader > 0.65 > 0.546 < 0.546
HHsearch* >95 >80 <80
PCONS > 2.17 > 1.03 < 1.03
PHYRE < 0.085 < 0.27 > 0.27

* - the same score was used regardless of the database.

Kozlowski and Bujnicki

Kozlowski and Bujnicki BMC Bioinformatics 2012 13:111   doi:10.1186/1471-2105-13-111

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