Table 4

Meta-knowledge assignment results on events in the GENIA-MK test set
Dimension Value Count R / P / F Majority (R / P / F)
KT Investigation 411 69.1 / 75.5 / 72.2 0.0 / 0.0 / 0.0
Analysis 1,340 70.4 / 78.4 / 74.2 0.0 / 0.0 / 0.0
Observation 2,593 72.1 / 72.3 / 72.2 100.0 / 34.0 / 50.7
Fact 673 63.7 / 68.0 / 65.8 0.0 / 0.0 / 0.0
Method 178 53.4 / 54.3 / 53.8 0.0 / 0.0 / 0.0
Other 2,440 77.0 / 70.6 / 73.6 0.0 / 0.0 / 0.0
Macro Average 7,635 67.6 / 70.0 / 68.6 16.7 / 5.7 / 8.5
Micro Average 7,635 72.0 / 72.0 / 72.0 34.0 / 34.0 / 34.0
CL L3 7,057 97.6 / 97.5 / 97.6 100 / 92.4 / 96.1
L2 420 68.6 / 64.6 / 66.5 0.0 / 0.0 / 0.0
L1 158 67.1 / 84.8 / 74.9 0.0 / 0.0 / 0.0
Macro Average 7,635 77.8 / 82.3 / 79.7 33.3 / 30.8 / 32.0
Micro Average 7,635 95.4 / 95.4 / 95.4 92.4 / 92.4 / 92.4
Polarity Positive 7,201 97.3 / 98.0 / 97.7 100 / 94.3 / 97.1
Negative 434 67.1 / 60.1 / 63.4 0.0 / 0.0 / 0.0
Macro Average 7,635 77.8 / 82.3 / 79.7 50.0 / 47.2 / 48.5
Micro Average 7,635 95.6 / 95.6 / 95.6 94.3 / 94.3 / 94.3
Manner High 275 49.8 / 46.4 / 48.1 0.0 / 0.0 / 0.0
Low 59 23.7 / 48.3 / 31.8 0.0 / 0.0 / 0.0
Neutral 7,301 97.7 / 97.6 / 97.6 100 / 95.6 / 97.8
Macro Average 7,635 57.1 / 64.1 / 59.2 33.3 / 31.9 / 32.6
Micro Average 7,635 95.4 / 95.4 / 95.4 95.6 / 95.6 / 95.6
Source Current 7,510 99.1 / 99.2 / 99.2 100 / 98.4 / 99.2
Other 125 53.6 / 50.0 / 51.7 0.0 / 0.0 / 0.0
Macro Average 7,635 76.4 / 74.6 / 75.5 50.0 / 49.2 / 49.6
Micro Average 7,635 98.4 / 98.4 / 98.4 98.4 / 98.4 / 98.4

A majority class-based baseline is shown for reference. (R)ecall/(P)recision/(F)score are reported.

Miwa et al.

Miwa et al. BMC Bioinformatics 2012 13:108   doi:10.1186/1471-2105-13-108

Open Data