Table 3

The msTALI alignment of three structures of DNA polymerase I in different conformations
480 490 500 510 520
1KTQ GHPFNLNSRDQLERVLFDELGLPAI---------STSAAVLEALREAHP
2KTQ GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHP (a)
3KTQ GHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHP
-H1----- -H2---
640 650 660 670 680 690
1KTQ EGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS
2KTQ -GRDIHTETAS----------DPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS (b)
3KTQ EGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQS
----N----- ----O------- --O1-- --O2----------
740
1KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
2KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF (c)
3KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
-P------ -10 -11 -------Q------------------------

Low-scoring residues are highlighted in yellow. Secondary structures are annotated below the alignment.

Shealy and Valafar

Shealy and Valafar BMC Bioinformatics 2012 13:105   doi:10.1186/1471-2105-13-105

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