Table 1

The STAMP alignment of three structures of DNA polymerase I in different conformations
480 490 500 510 520
1KTQ GHPFNLNSRDQLERVLFDELGLPAISTS—A-----AV-LE--A---LREA-HP
2KTQ GHPFNLNSRDQLERVLFDELGLP----AIGKTEKTGKRSTSAAVLEALREAHP (a)
3KTQ GHPFNLNSRDQLERVLFDELGLP----AIGKTEKTGKRSTSAAVLEALREAHP
-H1----- -H2---
640 650 660 670 680 690
1KTQ EGRDIHTETASWMFGVPREAVD-PL--M--R---------RAAKTINFG-VLYGMSAHRLSQEL-AIPYEEAQAFIERYFQS
2KTQ EGRDIHTETA----S-----D--PL--M--R---------RAAKTINFG-VLYGMSAHRLSQEL-AIPYEEAQAFIERYFQS (b)
3KTQ EGRDIHTET-------------ASWMFGVPREAVDPLMRRAA-KTINFGVL-YGMSAHRLSQELAIP-YEEAQAFIERYFQS
----N----- ----O------------------- --O1-- --O2----------
710 740
1KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
2KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF (c)
3KTQ TLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLF
-P------ -10 -11 -------Q------------------------

Shealy and Valafar

Shealy and Valafar BMC Bioinformatics 2012 13:105   doi:10.1186/1471-2105-13-105

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