Table 6

Public software and resources used in the GN task.

Step

Software

Other Public Resources


1)

ABNER [26]

AIIAGMT [27]

BANNER [28]

GNAT [29]

NERsuite [30]

LingPipe [31]

Entrez Gene [32]

Gene and Protein Synonym DataBase (GPSDB) [33]

Unified Medical Language System (UMLS) [34]

UniProt [35]


2)

Linnaeus [25]

NCBI Taxonomy

Cell Line Knowledge Base (CLKB) [36,37]


3) & 4)

Entrez Gene [32]

Lucene [38]

BioThesaurus [39]

GeneRIF annotations

Gene Ontology (GO) annotations & predictions [40]

MeSH annotations

OMIM records


Lu et al. BMC Bioinformatics 2011 12(Suppl 8):S2   doi:10.1186/1471-2105-12-S8-S2

Open Data