Table 4

Detailed gene descriptions of SNPs selected in chromosome 6 of T1D study.

SNP ID

Gene Symbol

Gene ID

Description

rs6940177

TRDN

10345

triadin

rs17209874

RUNX2

860

runt-related transcription factor 2

rs9479373

LOC646024

646024

locus-region

rs3778077

NUDT3

11165

nudix (nucleoside diphosphate linked moiety X)-type motif 3

rs16875181

GPR116

221395

G protein-coupled receptor 116

rs7754428

GMDS

2762

GDP-mannose 4,6-dehydratase

rs6902158

LRRC16

55604

leucine rich repeat containing 16

rs6912853

BTN3A1

11119

butyrophilin, subfamily 3, member A1

rs991974

LMBRD1

55788

chromosome 6 open reading frame 209

rs643394

LOC442256

442256

similar to PPP1R14B protein

rs9397339

PLEKHG1

57480

pleckstrin homology domain containing, family G (with RhoGef domain) member 1

rs319123

C6orf210

57107

chromosome 6 open reading frame 210

rs352095

FLJ34503

285759

hypothetical protein FLJ34503

rs1738262

DNAH8

1769

dynein, axonemal, heavy polypeptide 8

rs7760230

SNX9

51429

sorting nexin 9

rs10947885

LRFN2

57497

leucine rich repeat and fibronectin type III domain containing 2

rs1334689

EPB41L2

2037

erythrocyte membrane protein band 4.1-like 2

rs1406882

FYN

2534

FYN oncogene related to SRC, FGR, YES

rs1563666

LOC643281

643281

intron

rs9321142

LAMA2

3908

laminin, alpha 2 (merosin, congenital muscular dystrophy)

rs2073012

NOX3

50508

NADPH oxidase 3

rs11154452

LAMA2

3908

laminin, alpha 2 (merosin, congenital muscular dystrophy)

rs9394755

UNC5CL

222643

unc-5 homolog C (C. elegans)-like

rs9371491

MTHFD1L

25902

methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like an enzyme involved in THF synthesis in mitochondria

rs6918886

RPS6KA2

6196

ribosomal protein S6 kinase, 90kDa, polypeptide 2

Liu et al. BMC Bioinformatics 2011 12(Suppl 5):S4   doi:10.1186/1471-2105-12-S5-S4