Table 3

Significance of selected SNP networks in different thresholds of T1D study.

PLINK thresholds

NO. of networks

Selected mean

Random

Significance value

mean

variance


0.1

2

1(0.0985)

1(0.5648)

1(0.0991)

1.2672 × 10–6

2(0.0450)

2(0.5645)

2(0.1008)

1.2765 × 10–7

0.05

4

1(0.0298)

1(0.5805)

1(0.1018)

3.1578 × 10–8

2(0.0225)

2(0.5682)

2(0.0995)

2.0741 × 10–8

3(0.0306)

3(0.5638)

3(0.1005)

5.6191 × 10–8

4(0.0203)

4(0.5633)

4(0.1002)

2.9939 × 10–8

0.01

5

1(0.0054)

1(0.5862)

1(0.1003)

3.5062 × 10–9

2(0.0057)

2(0.5645)

2(0.0983)

6.5545 × 10–9

3(0.0012)

3(0.5622)

3(0.0971)

3.7898 × 10–9

4(0.0011)

4(0.5545)

4(0.1009)

2.0716 × 10–8

5(0.0015)

5(0.5528)

5(0.1004)

1.9979 × 10–8

0.005

3

1(0.0011)

1(0.5327)

1(0.1024)

1.0436 × 10–7

2(0.0012)

2(0.5300)

2(0.0998)

5.8348 × 10–8

3(0.0015)

3(0.5762)

3(0.1004)

5.1991 × 10–9

0.001

1

1(0.0001)

1(0.5578)

1(0.0950)

2.1721 × 10–9


Liu et al. BMC Bioinformatics 2011 12(Suppl 5):S4   doi:10.1186/1471-2105-12-S5-S4

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