Table 1

Most significant modules according to function or motif

ID

Size

Enriched Function

p- value

Enriched Motif

p- value


c1402

174

structural constituent of ribosome

<1E-300

UP1ATMSD

<1E-16

c1473

110

photosynthetic membrane

1.30E-137

ACGTROOT1.1

4.00E-15

c1051

70

proteasome complex

5.90E-126

SITEIIATCYTC

6.00E-06

c1474

154

plastid

3.70E-93

UP1ATMSD

1.40E-08

c453

91

response to heat

1.20E-54

HSE

3.80E-11

c992

47

nucleosome assembly

1.20E-50

OCETYPEINTHISTONE

2.30E-14

c619

47

mitochondrion

5.40E-50

-

-

c1434

53

plastid

5.10E-41

UP1ATMSD

5.60E-05

c1463

56

chloroplast thylakoid

5.60E-38

-

-

c620

65

mitochondrion

1.00E-32

SITEIIATCYTC

1.60E-07

c1090

30

RNA splicing

1.70E-31

-

-

c991

45

DNA metabolic process

2.20E-31

E2FAT

1.10E-06

c148

112

nutrient reservoir activity

6.60E-31

RYREPEATBNNAPA

4.50E-12

c1257

55

endoplasmic reticulum

7.30E-30

UPRMOTIFIIAT

3.70E-11

c973

134

microtubule motor activity

8.20E-30

MYBCOREATCYCB1

6.10E-11

c701

17

aromatic compound metabolic process

8.00E-24

L1DCPAL1

5.90E-08

c294

26

response to water

2.60E-22

DRECRTCOREAT

5.10E-06

c778

99

circadian rhythm

2.00E-17

EVENINGAT

2.20E-16

c711

18

response to auxin stimulus

6.70E-15

MYCATRD22

4.90E-05

c488

72

defense response

7.10E-15

CGCGBOXAT

2.30E-10

c1369

59

ribonucleoprotein complex biogenesis and assembly

8.00E-15

UP2ATMSD

<1E-16

c489

81

response to abiotic stimulus

9.30E-09

CGCGBOXAT

<1E-16

c493

25

glutathione transferase activity

7.00E-07

OCSELEMENTAT.4

7.80E-16

c316

9

abscisic acid mediated signaling

1.90E-06

ABREATRD22

1.00E-06

c140

36

embryonic development ending in seed dormancy

1.60E-05

ABRERATCAL

4.00E-10

c302

14

response to abscisic acid stimulus

1.90E-04

ABRE3HVA1

9.20E-07


Ruan et al. BMC Bioinformatics 2011 12(Suppl 12):S2   doi:10.1186/1471-2105-12-S12-S2

Open Data