Table 1

Summary of viruses detected from L1 un-mappable reads.

Viral acc.

CN

RN

Name

Host


NC_007605.1

105,325 (86,191)

629 (469)

Human herpesvirus 4 type 1

human

NC_006146.1

8,556 (7,311)

157 (34)

Macacine herpesvirus 4

rhesus

NC_001798.1

2,332 (243)

348 (21)

Human herpesvirus 2

human

NC_005261.2

8,247 (200)

304 (18)

Bovine herpesvirus 5

bovine

NC_007653.1

7,458 (172)

363 (24)

Papiine herpesvirus 2

baboon

NC_001806.1

1,773 (147)

278 (13)

Human herpesvirus 1

human

NC_006560.1

6,107 (118)

332 (14)

Cercopithecine herpesvirus 2

monkey

NC_004812.1

5,961 (107)

364 (7)

Macacine herpesvirus 1

rhesus


CN denotes copy number of total reads mappable to the virus; RN denotes the number of distinct genomic regions mapped by reads. The values in parentheses denote the corresponding values when no mismatch was allowed in the mapping procedure. Because their high similarity, most of the reads of type 1 EBV were also mapped back to type 2 EBV.

Li et al. BMC Bioinformatics 2011 12(Suppl 1):S9   doi:10.1186/1471-2105-12-S1-S9

Open Data