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Open Access Highly Accessed Research article

Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies

Joshua Wetzel1, Carl Kingsford2 and Mihai Pop2*

Author Affiliations

1 Department of Computer Science, Princeton University, Princeton, NJ, USA

2 Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD, USA

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BMC Bioinformatics 2011, 12:95  doi:10.1186/1471-2105-12-95

Published: 13 April 2011

Additional files

Additional file 1:

A list of the 391 genomes used in the study, along with their identifiers. The 360 genome subset of these that are discussed in the Results subsection regarding simulated comparison of 'tuned' vs standard mate-pair libraries are each marked with an asterisk (*).

Format: CSV Size: 15KB Download file

Open Data