Table 6

Evaluation of scoring criteria concerning detection of GAB2 SNPs

Rank

α = 3

α = 12

α = 21

α = 54

α = 162

α = 1000

K2

MML1

MDLn

Suz1

Epi2

MDR


1

4

4

4

4 G

4 G

4

4 G

4 G

4 G

3

4 G

4


2

4

4

4

4 G

4 G

4

4 G

4 G

4 G

3 G

4 G

4


3

4

4

4 G

4 G

4

4

4 G

4 G

4 G

3 G

4 G

4


4

4

4

4

4 G

4 G

4

4

4

4 G

3

4 G

4


5

4

4

4

4

4

4

4

3

4 G

3

3

4


6

4

4

4

4

4 G

4

4

4

4

3 G

4 G

4 G


7

4

4

4

4 G

4

4

4

4

4

3 G

4

4


8

4

4

4

4

4

4

4

4

4 G

3 G

4

4 G


9

4

4

4

4 G

4

4

4

4

4 G

3 G

4 G

4


10

4

4

4

4 G

4 G

4

4

3 G

4

2

4 G

4 G


11

4

4

4 G

4 G

4 G

4 G

4 G

4

4

3

4

4


12

4

4 G

4 G

4

4 G

4 G

4 G

4

4

3 G

4

4 G


13

4

4

4

4 G

4 G

4 G

4

4 G

4 G

3 G

4

4


14

4

4

4

4

4 G

4

4 G

4 G

4

3

3 G

4


15

4

4

4 G

4 G

4 G

4

4 G

3 G

4

3 G

4 G

4 G


16

4

4

4 G

4 G

4 G

4 G

4 G

4

4

3 G

3 G

4


17

4

4

4

4 G

4 G

4

4 G

3

4 G

3

4

4 G


18

4

4

4 G

4 G

4 G

4 G

4

4 G

4 G

3 G

4

4


19

4

4

4 G

4 G

4 G

4 G

4

4 G

4 G

3 G

4

4


20

4

4

4

4 G

4 G

4 G

4

4 G

4

3 G

4 G

4 G


21

4

4

4

4 G

4

4 G

4

4 G

4 G

3 G

4 G

4 G


22

4

4 G

4

4 G

4 G

4 G

4

4

4 G

3

4 G

4


23

4

4 G

4

4 G

4

4 G

4 G

4

4 G

3 G

4

4


24

4

4

4 G

4 G

4 G

4

4

4

4 G

3 G

4 G

4


25

4

4

4

4

4 G

4

4

4

4 G

3 G

3

4


Total # G G##GGG

0

3

7

19

18

10

10

11

16

17

14

8


# Diff G

0

2

3

7

6

4

4

4

8

8

8

6


Information about the 25 highest scoring models for a variety of scoring criteria. The number on the left in a cell is the number of SNPs in the model, and the letter G appears to the right of that number if a GAB2 SNP appears in the model. The second to the last row shows the total number of models in the top 25 that contained a GAB2 SNP. The last row shows the total number of different GAB2 SNPs appearing in the top 25 models.

Jiang et al. BMC Bioinformatics 2011 12:89   doi:10.1186/1471-2105-12-89

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