Email updates

Keep up to date with the latest news and content from BMC Bioinformatics and BioMed Central.

Open Access Highly Accessed Research article

Predicting RNA-Protein Interactions Using Only Sequence Information

Usha K Muppirala12*, Vasant G Honavar13 and Drena Dobbs12

Author Affiliations

1 Bioinformatics and Computational Biology Program, Iowa State University, Ames, Iowa, USA

2 Department of Genetics, Development and Cell Biology, Iowa State University, Ames, Iowa, USA

3 Department of Computer Science, Iowa State University, Ames, Iowa, USA

For all author emails, please log on.

BMC Bioinformatics 2011, 12:489  doi:10.1186/1471-2105-12-489

Published: 22 December 2011

Additional files

Additional file 1:

List of RNA and protein features important for distinguishing interacting and non-interacting RNA-protein pairs (S1).

Format: TXT Size: 1KB Download file

Open Data

Additional file 2:

Positive RPIs in the RPI2241 dataset. This is a tab-delimited file with two columns. The first column is a list of proteins and the second column is a list of corresponding RNAs (S2).

Format: TXT Size: 31KB Download file

Open Data

Additional file 3:

Positive RPIs in RPI369 dataset. This is a tab-delimited file with two columns. The first column is a list of proteins and the second column is a list of corresponding RNAs (S3).

Format: TXT Size: 5KB Download file

Open Data