Table 1

Probe sets that query the ESR1 and ERBB2 genes

Gene annotation

Jetset scores


Probe set

Affy/Bioc

Jetset

Ss

Sc

Sr

So


205225_at

ESR1

ESR1

0.91

1.00

0.64

0.58

211233_x_at

ESR1

ESR1

0.64

1.00

0.00

0.00

211234_x_at

ESR1

ESR1

0.55

1.00

0.00

0.00

211235_s_at

ESR1

ESR1

0.91

1.00

0.00

0.00

211627_x_at

ESR1

--

--

--

--

--

215551_at

ESR1

--

--

--

--

--

215552_s_at

ESR1

ESR1

0.91

1.00

0.00

0.00

217163_at

ESR1

ESR1

0.27

0.00

0.00

0.00

217190_x_at

ESR1

ESR1

0.55

1.00

0.00

0.00

210930_s_at

ERBB2

ERBB2

0.82

1.00

0.00

0.00

216836_s_at

ERBB2

ERBB2

0.91

1.00

0.52

0.48


Gene annotations are from the manufacturer (Affy) or from Bioconductor (Bioc) or derived in the present analysis (Jetset). Probe sets that did not meet the Jetset annotation specificity criteria are indicated by "--". Each probe set was scored for specificity (Ss), coverage (Sc), robustness against mRNA degradation (Sr), and a combined overall score (So). For each gene, the probe set with the highest overall score (in bold) is selected to represent that gene.

Li et al. BMC Bioinformatics 2011 12:474   doi:10.1186/1471-2105-12-474

Open Data