Table 1 |
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|
Probe sets that query the ESR1 and ERBB2 genes |
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|
Gene annotation |
Jetset scores |
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|
|
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|
Probe set |
Affy/Bioc |
Jetset |
Ss |
Sc |
Sr |
So |
|
|
||||||
|
205225_at |
ESR1 |
ESR1 |
0.91 |
1.00 |
0.64 |
0.58 |
|
211233_x_at |
ESR1 |
ESR1 |
0.64 |
1.00 |
0.00 |
0.00 |
|
211234_x_at |
ESR1 |
ESR1 |
0.55 |
1.00 |
0.00 |
0.00 |
|
211235_s_at |
ESR1 |
ESR1 |
0.91 |
1.00 |
0.00 |
0.00 |
|
211627_x_at |
ESR1 |
-- |
-- |
-- |
-- |
-- |
|
215551_at |
ESR1 |
-- |
-- |
-- |
-- |
-- |
|
215552_s_at |
ESR1 |
ESR1 |
0.91 |
1.00 |
0.00 |
0.00 |
|
217163_at |
ESR1 |
ESR1 |
0.27 |
0.00 |
0.00 |
0.00 |
|
217190_x_at |
ESR1 |
ESR1 |
0.55 |
1.00 |
0.00 |
0.00 |
|
210930_s_at |
ERBB2 |
ERBB2 |
0.82 |
1.00 |
0.00 |
0.00 |
|
216836_s_at |
ERBB2 |
ERBB2 |
0.91 |
1.00 |
0.52 |
0.48 |
|
|
||||||
|
Gene annotations are from the manufacturer (Affy) or from Bioconductor (Bioc) or derived in the present analysis (Jetset). Probe sets that did not meet the Jetset annotation specificity criteria are indicated by "--". Each probe set was scored for specificity (Ss), coverage (Sc), robustness against mRNA degradation (Sr), and a combined overall score (So). For each gene, the probe set with the highest overall score (in bold) is selected to represent that gene. |
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|
Li et al. BMC Bioinformatics 2011 12:474 doi:10.1186/1471-2105-12-474 |
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