Table 1

Modules available in SIGNATURES

Module

Use Case

Publication


ScoreSignatures

To predict activation of pathways in gene expression data.

CreateSignature

To create a new gene expression signature using a training set.

1

BFRMNormalize

To remove technical variation across one or more gene expression data sets.

2

FindSubtypes

To find subtypes within a gene expression data set.

3

PredictSubtypes

To assign a subtype to gene expression data using a previously developed model.

3

BFRMFactor

To dissect a gene expression data set into modules.

4

BFRMProject

To score the modules in gene expression data using a previously developed model.

5


SIGNATURE includes modules that perform a range of analyses on gene expression data 1[24]2[31]3[25]4[32]5[33].

Chang et al. BMC Bioinformatics 2011 12:443   doi:10.1186/1471-2105-12-443

Open Data