Additional file 4.

Single nucleotide variant discrepancies within 15 DNA samples analyzed both by Affymetrix MitoChip v2.0 with the MFP analysis algorithm and by either Sanger or Illumina Genome Analyzer II Sequencing methods. Whole mtDNA genome sequence data was compared for all 15 high quality samples detailed in Table 2, as well as for 3 samples found to have poor quality (#14, #17, and #18). No sequence discrepancies were noted between MitoChip v2.0 and 7 of the high quality samples (#10, #11, #13, #15, #16, #21, #22), nor in sample #14 at any base positions outside of its large deleted region.

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Xie et al. BMC Bioinformatics 2011 12:402   doi:10.1186/1471-2105-12-402