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Open Access Highly Accessed Research article

nocoRNAc: Characterization of non-coding RNAs in prokaryotes

Alexander Herbig and Kay Nieselt*

Author Affiliations

Center for Bioinformatics Tübingen, University of Tübingen, Sand 14, 72076 Tübingen, Germany

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BMC Bioinformatics 2011, 12:40  doi:10.1186/1471-2105-12-40

Published: 31 January 2011

Additional files

Additional file 1:

GFF file containing all results of the application of nocoRNAc to the genome of S. coelicolor. This file is intended to be loaded into a genome browser or other programs processing chromosomal annotations.

Format: GFF Size: 12.4MB Download file

Open Data

Additional file 2:

Table of all predicted ncRNA transcripts in the genome of S. coelicolor. This table (xls format) contains locus information on all predicted ncRNA transcripts in the genome of S. coelicolor. Additional information like the RNAz region in which the transcript was predicted as well as the strength of the SIDD site and terminator are provided.

Format: XLS Size: 133KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3:

Expression value table of putative ncRNA transcripts. The table contains expression data of the 403 putative ncRNA transcripts for which the expression was measured at 32 time points along the growth curve of S. coelicolor under phosphate limited conditions.

Format: XLS Size: 434KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data