Table 2

Run time

Data set

BHC-SE

BHC-SE mixture model

Genes

Time points

Replicates


S. cerevisiae 1

6 m 3 s

38 m 49 s

169

17

N/A

S. cerevisiae 2

24 m 8 s

5 h 48 m

440

15

2

H. sapiens

19 s

49 s

58

10

44

E. coli

7 m 6 s

34 m 39 s

200

13

6


Run times of data sets for BHC-SE and BHC-SE with a mixture model likelihood in hours (h), minutes (m) and seconds (s) on a 2.40 GHz Intel Xeon CPU. The run times for BHC-C were very similar to BHC-SE. Using replicate information did not increase the run times. Also shown are the number of genes, time points and replicates for each dataset.

Cooke et al. BMC Bioinformatics 2011 12:399   doi:10.1186/1471-2105-12-399

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