Table 5 |
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|
Run times in seconds for AmpliconNoise and the original PyroNoise for the V5 'Artificial Community' data set |
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|
AmpliconNoise |
PyroNoise |
|||||
|
|
||||||
|
Process |
Cores |
Wall |
CPU |
Cores |
Wall |
CPU |
|
|
||||||
|
Initial pairwise distances (NDist) |
64 |
1900 |
45358 |
64 |
1900 |
45358 |
|
Initial clustering (FCluster) |
1 |
292 |
252 |
1 |
292 |
252 |
|
Flowgram clustering (PyroNoise) |
64 |
1904 |
9364 |
64 |
55241 |
686497 |
|
Sequence clustering (SeqNoise) |
64 |
503 |
20713 |
-- |
-- |
-- |
|
|
||||||
|
Total |
4599 |
75687 |
57433 |
732107 |
||
|
|
||||||
|
The results are for a Xeon Linux cluster running programs across a maximum of 64 cores. Two times in seconds are quoted for each step, wall (time) is the true time elapsed between the start and end of a process and CPU (time) is the total time over all cores spent on actual calculations. |
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|
Quince et al. BMC Bioinformatics 2011 12:38 doi:10.1186/1471-2105-12-38 |
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