Table 8

A fragment of the text output of this heterogeneous pipeline workflow (see Figure 16)

SamToolsCamldMDtag_1.OutputNo-DuplicatesBAMfile-1.bam.bai (Binary file)

SamToolsCamldMDtag_1.OutputNo-DuplicatesBAMfile-1.bam (Binary file)

...

BowtieEcoli_1.OutputMAPfile-1.map (ASCII file)

r0

- gi|110640213|ref|NC_008253.1|

3658049

ATGCTGGAATGGCGATAGTTGGGTGGGTATCGTTC

45567778999:9;;<===>?@@@@AAAABCCCDE

0

32:T>G,34:G > A

r1

- gi|110640213|ref|NC_008253.1|

1902085

CGGATGATTTTTATCCCATGAGACATCCAGTTCGG

45567778999:9;;<===>?@@@@AAAABCCCDE

0

r2

- gi|110640213|ref|NC_008253.1|

3989609

CATAAAGCAACAGTGTTATACTATAACAATTTTGA

45567778999:9;;<===>?@@@@AAAABCCCDE

0

r5

+ gi|110640213|ref|NC_008253.1|

4249841

CAGCATAAGTGGATATTCAAAGTTTTGCTGTTTTA

EDCCCBAAAA@@@@?>===<;;9:99987776554

0

...


Dinov et al. BMC Bioinformatics 2011 12:304   doi:10.1186/1471-2105-12-304

Open Data