Table 3

A fragment of the output result from the miBLAST pipeline workflow, see Figure 5

BLASTN 2.2.8 [Jan-05-2004]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

Query=probe:HG-U133A:1007_s_at:467:181; Interrogation_Position=3330; Antisense;

(25 letters)

Database:/ifs/ccb/CCB_SW_Tools/others/Bioinformatics/Blast/miBLAST/miblast/src/example/ecoli.nt

400 sequences; 4,662,239 total letters

Searching.done

Sequences producing significant alignments:

Score (bits)

E Value

gi|1790777|gb|AE000503.1|AE000503 Escherichia coli K-12 MG1655 s...

26

0.69

gi|2367246|gb|AE000436.1|AE000436 Escherichia coli K-12 MG1655 s...

26

0.69

gi|1788338|gb|AE000294.1|AE000294 Escherichia coli K-12 MG1655 s...

26

0.69

gi|1786819|gb|AE000166.1|AE000166 Escherichia coli K-12 MG1655 s...

26

0.69

gi|1788310|gb|AE000292.1|AE000292 Escherichia coli K-12 MG1655 s...

24

2.7


Dinov et al. BMC Bioinformatics 2011 12:304   doi:10.1186/1471-2105-12-304

Open Data