Table 1

Measures

MEASURE

"SIMPLE" (PAIRWISE)

CONDITIONAL

PARTIAL


Euclidean distance

μEC, [63]

-

-

Ls Norm (here s = 10)

μL, [64] (in literature s = 3)

-

-

Manhattan distance

μMA, [64]

-

-

dynamic time warping distance

μW, [43]

-

-

Pearson's correlation

μP, [65]

, [22] (*)

, [23]

Spearman's correlation

μS, [66]

-

-

Kendall's correlation

μ K, [67]

-

-

mutual information

μI, [66]

, [25]

(new)

coarse-grained information rate

, [52] (*)

, [52] (*)

-

Granger causality index

μG, [68]

, [34]

, [34]

symbol sequence similarity

, [38] (*)

-

-

mutual information of symbol sequence

, [38] (*)

-

-

mean of symbol sequence similarity and μI

, [38] (*)

-

-

conditional entropy of symbol sequence

-

, [38] (*)

-


This table summarizes all measures of interaction included in this study. Those are marked by (*) which, to our knowledge, have not been applied to gene expression before.

Hempel et al. BMC Bioinformatics 2011 12:292   doi:10.1186/1471-2105-12-292

Open Data