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ReadDB Provides Efficient Storage for Mapped Short Reads

P Alexander Rolfe12 and David K Gifford1*

Author Affiliations

1 Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA

2 Pathogenica, Inc, 18th Floor, 245 First Street, Cambridge, MA 02142, USA

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BMC Bioinformatics 2011, 12:278  doi:10.1186/1471-2105-12-278

Published: 7 July 2011

Additional files

Additional file 1:

A description of the ReadDB interface and the method calls it contains.

Format: PDF Size: 49KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

The Java class files, source files, and a HOWTO file describing how to setup the ReadDB server. Updated versions of the jar file are available at webcite.

Format: JAR Size: 406KB Download file

Open Data