IGV snapshot shows CNV identified using SeqGene CNV function on 9 pair of AML exome-Seq data. (A). Coordinates of Human hg19 assembly displayed. (B). Copy number aggregated across 9 pair of samples, genomic amplification is displayed in red bars and genomic deletion is displayed in blue bars; the height of color bars indicate the number of samples that displayed genomic aberrations. (C). Heatmap shows the predicted genomic segments (colored regions) and breakpoints using seqgene's cnv function; The colors indicate and mean marker signals with blue represents negative values and red represents positive values; (D) Density of refseq genes across genome.
Deng BMC Bioinformatics 2011 12:267 doi:10.1186/1471-2105-12-267