Table 1

Examples of Object Properties and Classes for the CE Ontology

Properties

Classes

Explanation


isSimilarTo

Chemical Compound,

Chemical Compound

Chemical Compound is similar to Chemical Compound


isActiveIn

Chemical Compound,

PubChem BioAssay

Chemical is tested active in the bioassay


isContainedIn

Chemical Compound,

Journal Article

Chemical is contained in the article


hasGenes

Pubchem BioAssay/Drug/Journal Article, Gene

Bioassay/Drug/Article has found the gene term related the corresponding text;

Bioassay/Drug/Article has a reference to the gene


hasDisease

Pubchem BioAssay/Drug/Journal Article, Disease

Bioassay/Drug/Article has found the disease term related the corresponding text;

Bioassay/Drug/Article has a reference to the disease


isAssociatedWith

Gene, Disease

Gene and disease is associated


hasSimilarity

Chemical Compound, Similarity

Chemical has similarity value based on Tanimoto coefficient.


Zhu et al. BMC Bioinformatics 2011 12:256   doi:10.1186/1471-2105-12-256

Open Data