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Open Access Highly Accessed Methodology article

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

Torbjørn Rognes

Author Affiliations

Department of Informatics, University of Oslo, PO Box 1080 Blindern, NO-0316 Oslo, Norway

Centre for Molecular Biology and Neuroscience (CMBN), Department of Microbiology, Rikshospitalet, Oslo University Hospital, PO Box 4950 Nydalen, NO-0424 Oslo, Norway

Sencel Bioinformatics AS, PO Box 180 Vinderen, NO-0319 Oslo, Norway

BMC Bioinformatics 2011, 12:221  doi:10.1186/1471-2105-12-221

Published: 1 June 2011

Additional files

Additional file 1:

Source code. The source code of SWIPE version 1.0, as well as a binary executable for 64-bit Linux and score matrices are included in this gzipped tar archive file.

Format: GZ Size: 56KB Download file

Open Data