Open Access Highly Accessed Research article

Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform

Jeanette E Eckel-Passow1*, Elizabeth J Atkinson1, Sooraj Maharjan1, Sharon LR Kardia2 and Mariza de Andrade1

  • * Corresponding author: Jeanette E Eckel-Passow eckel@mayo.edu

  • † Equal contributors

Author Affiliations

1 Division of Biomedical Statistics and Informatics, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA

2 Department of Epidemiology, University of Michigan, Ann Arbor, Michigan 48109, USA

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BMC Bioinformatics 2011, 12:220  doi:10.1186/1471-2105-12-220

Published: 31 May 2011

Additional files

Additional file 1:

Cumulative density of the rate of heterozygous SNPS for each of the autosomes individually as obtained from PennCNV and CRLMM/VanillaIce.

Format: PDF Size: 364KB Download file

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Additional file 2:

Software settings for Aroma.Affymetrix, Affymetrix Power Tools (APT), PennCNV and CRLMM/VanillaIce.

Format: PDF Size: 16KB Download file

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Open Data