Table 4 |
||||||
|
For each service, the collection of probesets with at least one mapped ACC. |
||||||
|
Service returns at least one mapped ACC |
#Probesets |
|||||
|
|
||||||
|
Affy_Q |
DAVID_Q |
EnV_Q |
Any ACC |
At least one SwissProt |
||
|
|
||||||
|
No |
No |
No |
7256 |
(13%) |
8499 |
(16%) |
|
✓ |
No |
No |
898 |
(2%) |
533 |
(1%) |
|
No |
✓ |
No |
6593 |
(12%) |
6881 |
(13%) |
|
✓ |
✓ |
No |
7710 |
(14%) |
8940 |
(16%) |
|
No |
No |
✓ |
174 |
(0%) |
134 |
(0%) |
|
✓ |
No |
✓ |
444 |
(1%) |
340 |
(1%) |
|
No |
✓ |
✓ |
433 |
(1%) |
352 |
(1%) |
|
✓ |
✓ |
✓ |
31167 |
(57%) |
28996 |
(53%) |
|
|
||||||
|
TOTAL |
54675 |
(100%) |
54675 |
(100%) |
||
|
|
||||||
|
Counts are for each "Venn diagram" subset of services indicated in columns 1-3. For example, 13% of probesets return no ACC from any service; 16% return no Swissprots. Only 57% of probesets have at least one ACC returned by all three services. As was seen in the "0" column of Table 2, DAVID returns answers for 85% of probesets, 74% for NetAffx, and 59% for EnVision. 80% of ACCs are SwissProt ACCs. |
||||||
|
Day et al. BMC Bioinformatics 2011 12:213 doi:10.1186/1471-2105-12-213 |
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