Table 3

Experimental results with synthetic data

HS1

HS2

HS3

time

% accuracy

time

% accuracy

time

% accuracy


BWA-SW

1358s

99.32

1269s

98.81

1212s

94.10

SSAHA2

5044s

99.86

4328s

99.86

4121s

99.18

Newbler

1192s

99.99

6066s

95.53

7260s

83.25

Segemehl

3824s

99.99

6823s

99.95

6299s

98.81

GASSST

855s

99.47

794s

99.27

693s

97.35

TAPyR 50

63s

99.99

113s

99.78

239s

98.20


Results of the experiments performed with synthetic data. The data sets were generated as described in the text. The tests were run under the same conditions as those with real data. Shown is the percentage of reads of each data set that were successfully aligned to their original positions in the reference sequence.

Fernandes et al. BMC Bioinformatics 2011 12:163   doi:10.1186/1471-2105-12-163

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