Table 2

The correlations between predictive HMV profiles in nonCpG-related and CpG-related promoters

CD4SE

High


H3K4me3

H3K79me1

H3K4me3

H3K79me1


non-CpG

Set I

H3K79me3

0.346

0.344

0.190

0.420

H2BK5me1

0.021

0.295

-0.072

0.378

Set II

H3K4me3

1.000

0.161

1.000

0.127

H3K27me1

0.006

0.231

0.014

0.355

CpG

H4K20me1

H3K27ac

H4K20me1

H3K27ac

Set I

H4K20me1

1.000

0.032

1.000

-0.009

H3K27ac

0.032

1.000

-0.009

1.000

Set II

H3K4me3

0.121

0.688

-0.013

0.799

H4K8ac

-0.031

0.512

-0.121

0.748


Two of the most frequently selected HMV types by our CoreBoost model in Set I and Set II are represented in rows for each subset. The two HMV types selected by the model of Karlic et al are represented in columns. The numbers are the median values of Pearson's correlation coefficient of HMV profiles in the promoter of CD4SE genes or promoter of highly expressed genes.

Zhang and Zhang BMC Bioinformatics 2011 12:155   doi:10.1186/1471-2105-12-155

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