Table 1

The performance of CoreBoost based on features in CpG- or nonCpG-related proximal promoter and gene body region

HMV groups

Sensitivity

PPV

F-Score


Promoter

CpG

0.579 ± 0.016

0.764 ± 0.028

0.658 ± 0.006


Set I

non-CpG

0.889 ± 0.032

0.771 ± 0.021

0.825 ± 0.007


Body

CpG

0.594 ± 0.013

0.789 ± 0.021

0.678 ± 0.007


non-CpG

0.876 ± 0.015

0.811 ± 0.013

0.842 ± 0.006


Promoter

CpG

0.523 ± 0.016

0.717 ± 0.021

0.605 ± 0.010


Set II

non-CpG

0.908 ± 0.033

0.790 ± 0.021

0.844 ± 0.007


Body

CpG

0.588 ± 0.015

0.736 ± 0.020

0.653 ± 0.008


non-CpG

0.892 ± 0.014

0.821 ± 0.012

0.854 ± 0.006


Averages and errors are given as the mean and standard deviation from 100 replicates. All of the CoreBoost performance statistics have a p-value < 1e-5.

Zhang and Zhang BMC Bioinformatics 2011 12:155   doi:10.1186/1471-2105-12-155

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